35. Bohan, D. A., Vacher, C., Tamaddoni-Nezhad, A., Dumbrell, A.J., Woodward, G. Next-generation Biomonitoring: large-scale, automatic reconstruction of ecological networks. Trends in Ecology and Evolution, in press

34. Lemanceau, P., Barret, M., Mazurier, S., Mondy, S., Pivato, B., Fort, T., Vacher C. 2016. Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere. Advances in Botanical Research, online

33. REX Consortium. 2016. Combining selective pressures to enhance the durability of disease resistance genes. Frontiers in Plant Science 7:1916

32. Fort, T. Robin, C., Capdevielle, X., Delière, L., Vacher C. 2016. Foliar fungal communities strongly differ between habitat patches in a landcape mosaic. PeerJ, 4:e2656

31. Jakuschkin, B., Fievet, V., Schwaller, L., Fort, T., Robin, C., Vacher, C. 2016. Deciphering the pathobiome: intra- and inter-kingdom interactions involving the pathogen Erysiphe alphitoides. Microbial Ecology, 72(4):870-880

30. Vacher, C., Hampe, A., Porté, A.J., Sauer, U., Compant, S., Morris, C.E. 2016. The phyllosphere: microbial jungle at the plant-climate interface. Annual Review of Ecology, Evolution, and Systematics, vol. 47, 1-24

29. Vacher, C., Cordier, T., Vallance, J. 2016. Phyllosphere fungal communities differentiate more thoroughly than bacterial communities along an elevation gradient. Microbial Ecology, 72(1):1-3

28. QUINTESSENCE Consortium. 2016. Networking our way to better Ecosystem Service provison. Trends in Ecology and Evolution, 31(2):105-115

27. Vacher, C., Tamaddoni-Nezhad A., Kamenova, S., Peyrard, N., Moalic, Y., Sabbadin, R., Schwaller, L., Chiquet, J., Smith, M. A., Vallance, J., Fievet, V., Jakuschkin, B., Bohan, D.A. 2016. Learning Ecological Networks from Next-Generation Sequencing Data. Advances in Ecological Research, 54, 1-39

26. Plomion, C., Bastien, C., Bogeat-Triboulot, M.-B., Bouffier, L., Déjardin, A., Duplessis, S., Fady, B., Heuertz, M., Le Gac, A.-L., Le Provost, G., Legué, V., Lelu-Walter, M.-A., Leplé, J.-C., Maury, S., Morel, A., Oddou-Muratorio, S., Pilate, G., Sanchez, L., Scotti, I., Scotti-Saintagne, C., Segura, V., Trontin, J.-F., Vacher, C.. 2016. Forest tree genomics: 10 achievements from the past 10 years and future prospects. Annals of Forest Science, 73:77

25. Desprez-Loustau, M-L., Agayo, J. Dutech, C., Hayden, K.J., Husson, C., Jakuschkin, B., Marçais, B., Piou, D., Robin, C.,  Vacher, C. 2016. An evolutionary ecology perspective to address forest pathology challenges of today and tomorrow. Annals of Forest Science, 73:45.

24. Mulder, C., Bennett, E.M., Bohan, D.A., Bonkowski, M., Carpenter, S.R., Chalmers, R., Cramer, W., Durance, I., Eisenhauer, N., Fontaine, C., Haughton, A.J., Hettelingh, J-P., Hines, J., Ibanez, S., Jeppesen, E., Krumins, J.A., Ma, A., Mancinelli, G., Massol, F., McLaughlin, O., Naeem, S., Pascual, U., Peñuelas, J., Pettorelli, N., Pocock, M.J.O., Raffaelli, D., Rasmussen, J.J., Rusch, G.M., Scherber, C., Setälä, H., Sutherland, W.J., Vacher, C., Voigt, W., Vonk, J.A., Wood, S.A., Woodward, G. 2015. 10 Years Later: Revisiting Priorities for Science and Society a Decade after the Millennium Assessment. Advances in Ecological Research, 53, 1-53

23. Leger, J-B., Daudin, J-J., Vacher, C. 2015.Clustering methods differ in their ability to detect patterns in ecological networks. Methods in Ecology and Evolution 6(4): 474-481

22. Coince, A., Cordier, T., Lengellé, J., Defossez, E., Vacher, C., Robin, C., Buée, M., Marçais, C. 2014.  Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns. PLOS ONE 9(6): e100668.

21. Leger, J-B., Vacher C, Daudin, J-J. 2014. Detection of structurally homogeneous subsets in graphs. Statistics & Computing 24: 675-692.

20. Castagneyrol, B., Jactel, H., Vacher, C., Koricheva, J., Brockerhoff, E. 2014. Effects of plant phylogenetic diversity on herbivory depend on herbivore specialization. Journal of Applied Ecology 54: 675-692.

19. Lagache, L., Leger, J-B., Daudin, J-J., Petit, R., Vacher C. 2013. Putting the biological species concept to the test: using mating networks to delimit species. PLOS ONE, 8(6): e68267

18. REX Consortium. 2013. Heterogeneity of selection pressures and the evolution of resistance. Trends in Ecology and Evolution 28(2):110-118

17. Cordier, T., Robin, C., Capdevielle, X., Fabreguettes, O., Desprez-Loustau, M-L., Vacher C. 2012. The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica L.) varies significantly along an elevation gradient. New Phytologist 196: 510-519

16. Cordier, T., Robin, C., Capdevielle, X., Desprez-Loustau, M-L., Vacher C. 2012. Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). Fungal Ecology 5: 509-520

15. Vacher, C., Kossler, T. M., Hochberg, M., Weis, A.E. 2011. Impact of interspecific hybridization between crops and weedy relatives on the evolution of flowering time in weedy phenotypes. PLOS ONE 6(2): e14649

14. Philibert, A., Desprez-Loustau, M-L., Fabre, B., Frey, P., Halkett, F., Husson, C., Lung-Escarmant, B., Marçais, B. Robin, C., Vacher, C., Makowski, D. 2011. Predicting invasion success of forest pathogenic fungi from species traits. Journal of Applied Ecology 48(6): 1381-1390

13. REX Consortium. 2010. The skill and style to model the evolution of resistance to pesticide and drugs. Evolutionary Applications 3(4): 375-390

12. Mariadassou, M., Robin, S., Vacher, C. 2010. Uncovering latent structure in valued graphs: a variational approach. Annals of Applied Statistics 4(2):715-742

11. Vacher, C., Daudin, J-J., Piou, D., Desprez-Loustau, M-L. 2010. Ecological integration of alien species into a tree-parasitic fungus network. Biological Invasions 12:3249-3259

10. Daudin, J-J., Pierre, L., Vacher, C. 2010. Model for heterogeneous random networks using continuous variables and an application to a tree-fungus networkBiometrics 66:1043-1051

9. Vacher, C., Piou, D., Desprez-Loustau, M-L. 2008. Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history. PLOS ONE 3(3):e1740

8. Vacher, C., Vile, D., Helion, M. Piou, D., Desprez-Loustau, M-L. 2008. Distribution of parasitic fungal species richness: influence of climate versus host species diversity. Diversity and Distributions 14(5):786-798

7. REX Consortium. 2007. Structure of the scientific community modelling the evolution of resistance. PloS ONE 2(12):e1275

6. Vacher, C., Bourguet, D., Desquilbet, M., Lemarié, M., Ambec, S. and M.E. Hochberg. 2006. Fees or refuges: which is better for the sustainable management of insect resistance to transgenic Bt corn? Biology Letters 2: 198-202

5. Vacher, C., Brown, S. and M.E. Hochberg. 2005.  Avoid, attack or do both? Behavioral and physiological adaptations in natural enemies faced with novel hosts. BMC Evolutionary Biology 5: 60

4. Weis, A.E., Winterer, J. A., Vacher, C., Freshwater, M., Kossler, T.M., Young, C.A. and G. LeBuhn. 2005. Phenological assortative mating: the nature and consequences of its frequency-dependance. Evolutionary Ecology Research 7: 161-181.

3. Vacher, C., Weis, A.E., Hermann, D., Kossler, T.M., Young, C. and M.E. Hochberg. 2004. Impact of ecological factors on the initial invasion of Bt transgenes into wild populations. Theoretical and Applied Genetics 109: 806-814

2. Vacher, C., Bourguet, D., Rousset, F., Chevillon, C. and M.E. Hochberg. 2004. High dose refuge strategies and genetically modified crops – Reply to Tabashnik et al. Journal of Evolutionary Biology 17: 913-918

1. Vacher, C., Bourguet, D., Rousset, F., Chevillon, C. and M.E. Hochberg. 2003. Modelling the spatial configuration of refuges for a sustainable control of pests: a case study of Bt cotton. Journal of Evolutionary Biology 16: 378-387

Other publications

REX Consortium. 2013. Gestion des résistances: l’importance des modalités de déploiement des substances. Phytoma 669: 10-14